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F
Finder (C function)
ft::Finder::Finder (C function)
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[1]
ft::Finder::multipleIndexesParallelSearch (C function)
ft::Finder::multipleIndexesSequentialSearch (C function)
ft::Finder::overrideFmIndex (C function)
ft::Finder::parallelSearch (C function)
ft::Finder::searchMonoIndex (C function)
ft::Finder::searchMultipleIndexes (C function)
ft::Finder::sequentialSearch (C function)
ft::FTSearch::FTSearch (C function)
ft::FTSearch::init (C function)
ft::FTSearch::overrideFinder (C function)
ft::FTSearch::overrideKmerGenerator (C function)
ft::FTSearch::overrideQueryExtractor (C function)
ft::FTSearch::overrideResultProcessor (C function)
ft::FTSearch::overrideStats (C function)
ft::FTSearch::overrideUtils (C function)
ft::FTSearch::overrideWriterBridge (C function)
ft::KmerGenerator::addtoKmerMap (C function)
ft::KmerGenerator::genCenteredSearchStrings (C function)
ft::KmerGenerator::genKmerMap (C function)
ft::KmerGenerator::genQueryKmers (C function)
ft::KmerGenerator::genSearchKmers (C function)
ft::KmerGenerator::genSlidingSearchStrings (C function)
ft::KmerGenerator::KmerGenerator (C function)
ft::KmerGenerator::overrideStats (C function)
ft::QueryExtractor::getInputQueries (C function)
ft::QueryExtractor::getInputQueriesRoutine (C function)
ft::QueryExtractor::getStartAndEndPointSequences (C function)
ft::QueryExtractor::overrideUtils (C function)
ft::QueryExtractor::QueryExtractor (C function)
ft::ResultProcessor::getIndexCounts (C function)
ft::ResultProcessor::overrideStats (C function)
ft::ResultProcessor::overrideUtils (C function)
ft::ResultProcessor::processIndexPos (C function)
ft::ResultProcessor::processResults (C function)
ft::ResultProcessor::ResultProcessor (C function)
ft::Stats::printKmerCountToFile (C function)
ft::Stats::printKmerSearchTimeToFile (C function)
ft::Stats::printMatchingReadsToFile (C function)
ft::Stats::Stats (C function)
ft::Utils::convertIndexPositionsToReadIDs (C function)
ft::Utils::convertReadIDsToReadNames (C function)
ft::Utils::fileIndexToQueryIndex (C function)
ft::Utils::getSetOfIndexes (C function)
ft::Utils::queryIndexToFileIndex (C function)
ft::Utils::reverseComplement (C function)
ft::Utils::split (C function)
ft::Utils::trimmedReadFileName (C function)
ft::Utils::Utils (C function)
ft::WriterBridge::overrideUtils (C function)
ft::WriterBridge::saveQueryOutput (C function)
ft::WriterBridge::WriterBridge (C function)
FTSearch (C function)
I
IFinder (C function)
K
KmerGenerator (C function)
Q
QueryExtractor (C function)
R
ResultProcessor (C function)
S
Stats (C function)
U
Utils (C function)
W
WriterBridge (C function)