Typedefs¶

Typedefs¶

namespace ft¶

Copyright (c) 2018, Wasserman lab

FILE ikmergenerator.h

DESCRIPTION This file contains the declaration of kmergenerator interface

Typedefs

typedef std::string SearchType¶

typedef std::map<std::pair<QueryType, int>, std::set<std::string> > SearchKmers¶

typedef std::map<std::pair<int, QueryType>, std::set<long long> > ResultsMap¶

typedef std::map<std::pair<int, QueryType>, std::set<size_t> > ReaIDsMap¶

typedef std::map<std::pair<int, QueryType>, uint> MapOfCounts¶

typedef std::tuple<uint, std::string, std::string, std::string> Query¶

typedef std::map<std::string, std::set<std::pair<int, QueryType> > > KmerMap¶

Enums

QueryType¶

Values:

1¶

ALT¶

CRO¶

Variables

const std::string ft::CENTERED = "CENTERED"

const std::string ft::SLIDING = "SLIDING"